otof protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

otof

Uncharacterized protein. (1960 aa)

Predicted Functional Partners:

Dysf

0.686

LOC103174685

0.589

acbd5

0.587

wfs1

0.585

wnt8a

0.585

adgrv1

0.585

K4G507_CALMI

0.584

LOC103175161

0.576

rora

0.538

slc17a8

0.505

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dysf	otof	ENSCMIP00000028715	ENSCMIP00000009385	Uncharacterized protein.	Uncharacterized protein.	0.686
K4G507_CALMI	acbd5	ENSCMIP00000013603	ENSCMIP00000002624	Glutaredoxin 5.	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	0.857
K4G507_CALMI	otof	ENSCMIP00000013603	ENSCMIP00000009385	Glutaredoxin 5.	Uncharacterized protein.	0.584
K4G507_CALMI	rora	ENSCMIP00000013603	ENSCMIP00000012296	Glutaredoxin 5.	Uncharacterized protein.	0.669
LOC103174685	adgrv1	ENSCMIP00000017248	ENSCMIP00000040564	VWFA domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.657
LOC103174685	otof	ENSCMIP00000017248	ENSCMIP00000009385	VWFA domain-containing protein.	Uncharacterized protein.	0.589
LOC103174685	slc17a8	ENSCMIP00000017248	ENSCMIP00000028614	VWFA domain-containing protein.	MFS domain-containing protein.	0.637
LOC103174685	wfs1	ENSCMIP00000017248	ENSCMIP00000002534	VWFA domain-containing protein.	Uncharacterized protein.	0.914
LOC103175161	otof	ENSCMIP00000039861	ENSCMIP00000009385	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.576
LOC103175161	slc17a8	ENSCMIP00000039861	ENSCMIP00000028614	V-SNARE coiled-coil homology domain-containing protein.	MFS domain-containing protein.	0.715
acbd5	K4G507_CALMI	ENSCMIP00000002624	ENSCMIP00000013603	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	Glutaredoxin 5.	0.857
acbd5	otof	ENSCMIP00000002624	ENSCMIP00000009385	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	Uncharacterized protein.	0.587
acbd5	rora	ENSCMIP00000002624	ENSCMIP00000012296	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	Uncharacterized protein.	0.669
adgrv1	LOC103174685	ENSCMIP00000040564	ENSCMIP00000017248	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	VWFA domain-containing protein.	0.657
adgrv1	otof	ENSCMIP00000040564	ENSCMIP00000009385	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.585
adgrv1	slc17a8	ENSCMIP00000040564	ENSCMIP00000028614	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	MFS domain-containing protein.	0.627
adgrv1	wfs1	ENSCMIP00000040564	ENSCMIP00000002534	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.816
otof	Dysf	ENSCMIP00000009385	ENSCMIP00000028715	Uncharacterized protein.	Uncharacterized protein.	0.686
otof	K4G507_CALMI	ENSCMIP00000009385	ENSCMIP00000013603	Uncharacterized protein.	Glutaredoxin 5.	0.584
otof	LOC103174685	ENSCMIP00000009385	ENSCMIP00000017248	Uncharacterized protein.	VWFA domain-containing protein.	0.589