Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000009396FSIP2 domain-containing protein. (288 aa)    
Predicted Functional Partners:
ttc21a
Uncharacterized protein.
   
  
 0.706
cfap44
Uncharacterized protein.
   
 0.690
ttc29
TPR_REGION domain-containing protein.
    
 
 0.682
tekt3
Uncharacterized protein.
   
 
 0.669
clrn3
Clarin 3.
     
 0.668
LOC103191579
Uncharacterized protein.
   
 0.637
ENSCMIP00000024450
Uncharacterized protein.
   
 0.637
armc2
Uncharacterized protein.
      
 0.629
LOC103172420
Uncharacterized protein.
   
 
 0.616
cfap43
Uncharacterized protein.
   
 
 0.616
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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