Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103177402Uncharacterized protein. (436 aa)    
Predicted Functional Partners:
ep300
Uncharacterized protein.
    
 0.888
wwp2
E3 ubiquitin-protein ligase.
    
 0.703
wwp1
Uncharacterized protein.
    
 0.703
ENSCMIP00000003601
Uncharacterized protein.
    
 0.640
pibf1
Uncharacterized protein.
 
 
 
 0.635
crebbp
Uncharacterized protein.
    
 0.628
ctnnb1
Uncharacterized protein.
    
 0.608
rara
Uncharacterized protein.
    
 0.552
rarb
Retinoic acid receptor beta-like protein.
    
 0.552
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
 0.550
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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