agbl5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

agbl5

Uncharacterized protein. (983 aa)

Predicted Functional Partners:

ENSCMIP00000008641

0.692

LOC103178839

0.692

elac2

0.689

b3galnt2

0.667

nup85

0.659

cfap73

0.609

slc7a14

0.590

ric1

0.590

LOC103179852

0.588

LOC103179853

0.588

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000008641	agbl5	ENSCMIP00000008641	ENSCMIP00000009451	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.692
ENSCMIP00000008641	elac2	ENSCMIP00000008641	ENSCMIP00000016156	ANK_REP_REGION domain-containing protein.	Lactamase_B domain-containing protein.	0.592
ENSCMIP00000008641	nup85	ENSCMIP00000008641	ENSCMIP00000001318	ANK_REP_REGION domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.555
LOC103178839	agbl5	ENSCMIP00000025771	ENSCMIP00000009451	Tetratricopeptide repeat protein 30A.	Uncharacterized protein.	0.692
LOC103179852	agbl5	ENSCMIP00000022972	ENSCMIP00000009451	SCP domain-containing protein; Belongs to the CRISP family.	Uncharacterized protein.	0.588
LOC103179853	agbl5	ENSCMIP00000022979	ENSCMIP00000009451	SCP domain-containing protein; Belongs to the CRISP family.	Uncharacterized protein.	0.588
agbl5	ENSCMIP00000008641	ENSCMIP00000009451	ENSCMIP00000008641	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.692
agbl5	LOC103178839	ENSCMIP00000009451	ENSCMIP00000025771	Uncharacterized protein.	Tetratricopeptide repeat protein 30A.	0.692
agbl5	LOC103179852	ENSCMIP00000009451	ENSCMIP00000022972	Uncharacterized protein.	SCP domain-containing protein; Belongs to the CRISP family.	0.588
agbl5	LOC103179853	ENSCMIP00000009451	ENSCMIP00000022979	Uncharacterized protein.	SCP domain-containing protein; Belongs to the CRISP family.	0.588
agbl5	b3galnt2	ENSCMIP00000009451	ENSCMIP00000026169	Uncharacterized protein.	Uncharacterized protein.	0.667
agbl5	cfap73	ENSCMIP00000009451	ENSCMIP00000017809	Uncharacterized protein.	DUF4200 domain-containing protein.	0.609
agbl5	elac2	ENSCMIP00000009451	ENSCMIP00000016156	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.689
agbl5	nup85	ENSCMIP00000009451	ENSCMIP00000001318	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.659
agbl5	ric1	ENSCMIP00000009451	ENSCMIP00000022401	Uncharacterized protein.	RIC1 domain-containing protein.	0.590
agbl5	slc7a14	ENSCMIP00000009451	ENSCMIP00000016277	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.590
b3galnt2	agbl5	ENSCMIP00000026169	ENSCMIP00000009451	Uncharacterized protein.	Uncharacterized protein.	0.667
cfap73	agbl5	ENSCMIP00000017809	ENSCMIP00000009451	DUF4200 domain-containing protein.	Uncharacterized protein.	0.609
elac2	ENSCMIP00000008641	ENSCMIP00000016156	ENSCMIP00000008641	Lactamase_B domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.592
elac2	agbl5	ENSCMIP00000016156	ENSCMIP00000009451	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.689