Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrps18aMitochondrial ribosomal protein S18A. (193 aa)    
Predicted Functional Partners:
mrps18c
Mitochondrial ribosomal protein S18C.
   
 0.999
mrps18b
Uncharacterized protein.
   
 0.990
mrps30
Uncharacterized protein.
   
 0.988
mrps14
Uncharacterized protein.
   
 0.984
Mrps28
Uncharacterized protein.
   
 0.983
mrps16
Uncharacterized protein.
   
 0.983
mrpl4
Uncharacterized protein.
   
 
 0.980
Mrps15
Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.
   
 0.979
mrpl52
Uncharacterized protein.
   
 
 0.978
mrps6
Uncharacterized protein.
   
 0.978
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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