camta1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

camta1

Uncharacterized protein. (1636 aa)

Predicted Functional Partners:

psme3ip1

0.921

psme3

0.763

dnajc8

0.584

nsf

0.572

coq4

0.563

rbfox1

0.522

ENSCMIP00000004337

0.501

pitpna

0.501

mn1

0.501

pitpnb

0.501

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004337	camta1	ENSCMIP00000004337	ENSCMIP00000009464	Uncharacterized protein.	Uncharacterized protein.	0.501
camta1	ENSCMIP00000004337	ENSCMIP00000009464	ENSCMIP00000004337	Uncharacterized protein.	Uncharacterized protein.	0.501
camta1	coq4	ENSCMIP00000009464	ENSCMIP00000037055	Uncharacterized protein.	Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial; Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides; Belongs to the COQ4 family.	0.563
camta1	dnajc8	ENSCMIP00000009464	ENSCMIP00000038907	Uncharacterized protein.	J domain-containing protein.	0.584
camta1	mn1	ENSCMIP00000009464	ENSCMIP00000035346	Uncharacterized protein.	Uncharacterized protein.	0.501
camta1	nsf	ENSCMIP00000009464	ENSCMIP00000019776	Uncharacterized protein.	Uncharacterized protein.	0.572
camta1	pitpna	ENSCMIP00000009464	ENSCMIP00000031054	Uncharacterized protein.	Uncharacterized protein.	0.501
camta1	pitpnb	ENSCMIP00000009464	ENSCMIP00000035352	Uncharacterized protein.	Uncharacterized protein.	0.501
camta1	psme3	ENSCMIP00000009464	ENSCMIP00000006039	Uncharacterized protein.	Uncharacterized protein.	0.763
camta1	psme3ip1	ENSCMIP00000009464	ENSCMIP00000026929	Uncharacterized protein.	Nefa_Nip30_N domain-containing protein.	0.921
camta1	rbfox1	ENSCMIP00000009464	ENSCMIP00000024435	Uncharacterized protein.	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	0.522
coq4	camta1	ENSCMIP00000037055	ENSCMIP00000009464	Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial; Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides; Belongs to the COQ4 family.	Uncharacterized protein.	0.563
dnajc8	camta1	ENSCMIP00000038907	ENSCMIP00000009464	J domain-containing protein.	Uncharacterized protein.	0.584
mn1	camta1	ENSCMIP00000035346	ENSCMIP00000009464	Uncharacterized protein.	Uncharacterized protein.	0.501
nsf	camta1	ENSCMIP00000019776	ENSCMIP00000009464	Uncharacterized protein.	Uncharacterized protein.	0.572
pitpna	camta1	ENSCMIP00000031054	ENSCMIP00000009464	Uncharacterized protein.	Uncharacterized protein.	0.501
pitpnb	camta1	ENSCMIP00000035352	ENSCMIP00000009464	Uncharacterized protein.	Uncharacterized protein.	0.501
psme3	camta1	ENSCMIP00000006039	ENSCMIP00000009464	Uncharacterized protein.	Uncharacterized protein.	0.763
psme3	psme3ip1	ENSCMIP00000006039	ENSCMIP00000026929	Uncharacterized protein.	Nefa_Nip30_N domain-containing protein.	0.970
psme3ip1	camta1	ENSCMIP00000026929	ENSCMIP00000009464	Nefa_Nip30_N domain-containing protein.	Uncharacterized protein.	0.921