tut7 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

tut7

Uncharacterized protein. (1576 aa)

Predicted Functional Partners:

lin28a

0.779

dis3l2

0.602

sympk

0.582

cpsf2

0.566

cpsf3

0.553

papolg

0.527

papola

0.527

lin28b

0.505

ENSCMIP00000007455

0.498

cpsf1

0.497

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000007455	cpsf1	ENSCMIP00000007455	ENSCMIP00000005462	RRM domain-containing protein.	Uncharacterized protein.	0.982
ENSCMIP00000007455	cpsf2	ENSCMIP00000007455	ENSCMIP00000007915	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.991
ENSCMIP00000007455	cpsf3	ENSCMIP00000007455	ENSCMIP00000019970	RRM domain-containing protein.	Uncharacterized protein.	0.993
ENSCMIP00000007455	papola	ENSCMIP00000007455	ENSCMIP00000040154	RRM domain-containing protein.	Uncharacterized protein.	0.911
ENSCMIP00000007455	papolg	ENSCMIP00000007455	ENSCMIP00000005206	RRM domain-containing protein.	Uncharacterized protein.	0.911
ENSCMIP00000007455	sympk	ENSCMIP00000007455	ENSCMIP00000045000	RRM domain-containing protein.	Uncharacterized protein.	0.994
ENSCMIP00000007455	tut7	ENSCMIP00000007455	ENSCMIP00000009509	RRM domain-containing protein.	Uncharacterized protein.	0.498
cpsf1	ENSCMIP00000007455	ENSCMIP00000005462	ENSCMIP00000007455	Uncharacterized protein.	RRM domain-containing protein.	0.982
cpsf1	cpsf2	ENSCMIP00000005462	ENSCMIP00000007915	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
cpsf1	cpsf3	ENSCMIP00000005462	ENSCMIP00000019970	Uncharacterized protein.	Uncharacterized protein.	0.999
cpsf1	papola	ENSCMIP00000005462	ENSCMIP00000040154	Uncharacterized protein.	Uncharacterized protein.	0.933
cpsf1	papolg	ENSCMIP00000005462	ENSCMIP00000005206	Uncharacterized protein.	Uncharacterized protein.	0.933
cpsf1	sympk	ENSCMIP00000005462	ENSCMIP00000045000	Uncharacterized protein.	Uncharacterized protein.	0.998
cpsf1	tut7	ENSCMIP00000005462	ENSCMIP00000009509	Uncharacterized protein.	Uncharacterized protein.	0.497
cpsf2	ENSCMIP00000007455	ENSCMIP00000007915	ENSCMIP00000007455	Cleavage and polyadenylation specificity factor subunit 2.	RRM domain-containing protein.	0.991
cpsf2	cpsf1	ENSCMIP00000007915	ENSCMIP00000005462	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.999
cpsf2	cpsf3	ENSCMIP00000007915	ENSCMIP00000019970	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.999
cpsf2	papola	ENSCMIP00000007915	ENSCMIP00000040154	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.942
cpsf2	papolg	ENSCMIP00000007915	ENSCMIP00000005206	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.942
cpsf2	sympk	ENSCMIP00000007915	ENSCMIP00000045000	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.999