ENSCMIP00000009542 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000009542

EF-hand domain-containing protein. (105 aa)

Predicted Functional Partners:

cast

0.846

capn7

0.834

ENSCMIP00000016661

0.744

Capn15

0.744

capn1

0.729

LOC103177931

0.729

LOC103180786

0.729

capn9

0.729

capn3

0.729

ENSCMIP00000038999

0.729

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Capn15	ENSCMIP00000009542	ENSCMIP00000016672	ENSCMIP00000009542	Uncharacterized protein.	EF-hand domain-containing protein.	0.744
Capn15	ENSCMIP00000016661	ENSCMIP00000016672	ENSCMIP00000016661	Uncharacterized protein.	Uncharacterized protein.	0.918
Capn15	cast	ENSCMIP00000016672	ENSCMIP00000041371	Uncharacterized protein.	Uncharacterized protein.	0.618
ENSCMIP00000009542	Capn15	ENSCMIP00000009542	ENSCMIP00000016672	EF-hand domain-containing protein.	Uncharacterized protein.	0.744
ENSCMIP00000009542	ENSCMIP00000016661	ENSCMIP00000009542	ENSCMIP00000016661	EF-hand domain-containing protein.	Uncharacterized protein.	0.744
ENSCMIP00000009542	ENSCMIP00000038999	ENSCMIP00000009542	ENSCMIP00000038999	EF-hand domain-containing protein.	Uncharacterized protein.	0.729
ENSCMIP00000009542	LOC103177931	ENSCMIP00000009542	ENSCMIP00000000967	EF-hand domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C2 family.	0.729
ENSCMIP00000009542	LOC103180786	ENSCMIP00000009542	ENSCMIP00000005308	EF-hand domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C2 family.	0.729
ENSCMIP00000009542	capn1	ENSCMIP00000009542	ENSCMIP00000000697	EF-hand domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C2 family.	0.729
ENSCMIP00000009542	capn3	ENSCMIP00000009542	ENSCMIP00000038973	EF-hand domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C2 family.	0.729
ENSCMIP00000009542	capn7	ENSCMIP00000009542	ENSCMIP00000048876	EF-hand domain-containing protein.	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.	0.834
ENSCMIP00000009542	capn9	ENSCMIP00000009542	ENSCMIP00000017703	EF-hand domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C2 family.	0.729
ENSCMIP00000009542	cast	ENSCMIP00000009542	ENSCMIP00000041371	EF-hand domain-containing protein.	Uncharacterized protein.	0.846
ENSCMIP00000016661	Capn15	ENSCMIP00000016661	ENSCMIP00000016672	Uncharacterized protein.	Uncharacterized protein.	0.918
ENSCMIP00000016661	ENSCMIP00000009542	ENSCMIP00000016661	ENSCMIP00000009542	Uncharacterized protein.	EF-hand domain-containing protein.	0.744
ENSCMIP00000016661	LOC103177931	ENSCMIP00000016661	ENSCMIP00000000967	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C2 family.	0.538
ENSCMIP00000016661	capn1	ENSCMIP00000016661	ENSCMIP00000000697	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C2 family.	0.619
ENSCMIP00000016661	cast	ENSCMIP00000016661	ENSCMIP00000041371	Uncharacterized protein.	Uncharacterized protein.	0.618
ENSCMIP00000038999	ENSCMIP00000009542	ENSCMIP00000038999	ENSCMIP00000009542	Uncharacterized protein.	EF-hand domain-containing protein.	0.729
ENSCMIP00000038999	cast	ENSCMIP00000038999	ENSCMIP00000041371	Uncharacterized protein.	Uncharacterized protein.	0.600