STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000009625Uncharacterized protein. (638 aa)    
Predicted Functional Partners:
LOC103190818
Uncharacterized protein.
 
 
0.845
fau
Ubiquitin-like domain-containing protein.
   
  0.709
ENSCMIP00000034764
Uncharacterized protein.
 
     
0.641
ENSCMIP00000034675
VWFD domain-containing protein.
 
 
 0.615
LOC103190842
Uncharacterized protein.
 
 
0.593
gle1
Nucleoporin GLE1.
    
 0.571
ENSCMIP00000038913
Nup214_FG domain-containing protein.
    
 0.565
aaas
WD_REPEATS_REGION domain-containing protein.
    
 0.553
nup50
Nuclear pore complex protein Nup50.
     
 0.546
f2
Uncharacterized protein; Belongs to the peptidase S1 family.
     
 0.535
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.