Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000009635Uncharacterized protein. (108 aa)    
Predicted Functional Partners:
c9orf72
Uncharacterized protein.
    
  0.909
smcr8
UDENN FLCN/SMCR8-type domain-containing protein.
    
 0.904
sqstm1
Uncharacterized protein.
    
 0.902
wdr41
Uncharacterized protein.
     
  0.900
rab8a
Uncharacterized protein.
     
 
0.900
LOC103179516
Ras-related protein Rab-39B-like protein.
     
 
0.900
exoc4
Sec8_exocyst domain-containing protein.
    
 0.551
exoc2
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
    
 0.522
exoc7
Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
    
 0.495
rab3il1
Sec2p domain-containing protein.
    
 0.487
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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