Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rfxankANK_REP_REGION domain-containing protein. (329 aa)    
Predicted Functional Partners:
rfx5
RFX-type winged-helix domain-containing protein.
    
 
 0.996
rfxap
RFXA_RFXANK_bdg domain-containing protein.
    
 
 0.993
ENSCMIP00000020143
NACHT domain-containing protein.
   
 0.929
rfx7
RFX-type winged-helix domain-containing protein.
    
 
 0.689
ENSCMIP00000009700
MADS-box domain-containing protein.
      
 0.668
mrpl55
Uncharacterized protein.
      
 0.611
camkmt
Uncharacterized protein.
      
 0.610
ccnk
Uncharacterized protein; Belongs to the cyclin family.
   
  
 0.588
thap4
THAP-type domain-containing protein.
      
 0.588
nfyc
Nuclear transcription factor Y, gamma.
      
 0.585
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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