Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xrcc6Uncharacterized protein. (667 aa)    
Predicted Functional Partners:
xrcc5
Ku domain-containing protein.
   
 0.999
prkdc
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.998
lig4
DNA ligase.
   
 0.995
dclre1c
Uncharacterized protein.
    
 0.989
lig3
DNA ligase.
   
 0.988
rad50
Zinc-hook domain-containing protein.
   
 0.988
ENSCMIP00000026210
Uncharacterized protein.
   
 
 0.987
parp1
Poly [ADP-ribose] polymerase.
   
 
 0.983
aplf
Uncharacterized protein.
    
 
 0.983
atm
Non-specific serine/threonine protein kinase.
    
 0.979
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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