svil protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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co-expression

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[Homology]

Score

svil

HP domain-containing protein. (2331 aa)

Predicted Functional Partners:

kif14

0.825

ENSCMIP00000010693

0.669

LOC103171685

0.669

LOC103189548

0.669

cldn19

0.617

eif3a

0.616

ENSCMIP00000005986

0.600

LOC103186672

0.600

plek2

0.555

rbfox1

0.554

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000005986	kif14	ENSCMIP00000005986	ENSCMIP00000022831	PH domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.687
ENSCMIP00000005986	svil	ENSCMIP00000005986	ENSCMIP00000009675	PH domain-containing protein.	HP domain-containing protein.	0.600
ENSCMIP00000010693	svil	ENSCMIP00000010693	ENSCMIP00000009675	HEPN domain-containing protein.	HP domain-containing protein.	0.669
LOC103171685	LOC103189548	ENSCMIP00000012624	ENSCMIP00000034417	HEPN domain-containing protein.	Uncharacterized protein.	0.918
LOC103171685	svil	ENSCMIP00000012624	ENSCMIP00000009675	HEPN domain-containing protein.	HP domain-containing protein.	0.669
LOC103186672	kif14	ENSCMIP00000032968	ENSCMIP00000022831	PH domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.687
LOC103186672	svil	ENSCMIP00000032968	ENSCMIP00000009675	PH domain-containing protein.	HP domain-containing protein.	0.600
LOC103189548	LOC103171685	ENSCMIP00000034417	ENSCMIP00000012624	Uncharacterized protein.	HEPN domain-containing protein.	0.918
LOC103189548	svil	ENSCMIP00000034417	ENSCMIP00000009675	Uncharacterized protein.	HP domain-containing protein.	0.669
cldn19	svil	ENSCMIP00000003974	ENSCMIP00000009675	Uncharacterized protein.	HP domain-containing protein.	0.617
eif3a	svil	ENSCMIP00000045264	ENSCMIP00000009675	Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	HP domain-containing protein.	0.616
kif14	ENSCMIP00000005986	ENSCMIP00000022831	ENSCMIP00000005986	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	PH domain-containing protein.	0.687
kif14	LOC103186672	ENSCMIP00000022831	ENSCMIP00000032968	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	PH domain-containing protein.	0.687
kif14	svil	ENSCMIP00000022831	ENSCMIP00000009675	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	HP domain-containing protein.	0.825
plek2	svil	ENSCMIP00000021285	ENSCMIP00000009675	Uncharacterized protein.	HP domain-containing protein.	0.555
rbfox1	svil	ENSCMIP00000024435	ENSCMIP00000009675	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.	HP domain-containing protein.	0.554
svil	ENSCMIP00000005986	ENSCMIP00000009675	ENSCMIP00000005986	HP domain-containing protein.	PH domain-containing protein.	0.600
svil	ENSCMIP00000010693	ENSCMIP00000009675	ENSCMIP00000010693	HP domain-containing protein.	HEPN domain-containing protein.	0.669
svil	LOC103171685	ENSCMIP00000009675	ENSCMIP00000012624	HP domain-containing protein.	HEPN domain-containing protein.	0.669
svil	LOC103186672	ENSCMIP00000009675	ENSCMIP00000032968	HP domain-containing protein.	PH domain-containing protein.	0.600