Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl3439S ribosomal protein L34, mitochondrial-like protein. (114 aa)    
Predicted Functional Partners:
mrpl13
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.975
ENSCMIP00000025885
Uncharacterized protein.
   
 
 0.969
Ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.968
mrpl41
Uncharacterized protein.
   
 
 0.964
mrpl52
Uncharacterized protein.
   
 
 0.964
Mrpl43
L51_S25_CI-B8 domain-containing protein.
   
 
 0.963
mrpl20
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
   
 
 0.963
mrps30
Uncharacterized protein.
    
 
 0.962
mrpl30
Ribosomal_L30 domain-containing protein.
   
 
 0.958
mrps14
Uncharacterized protein.
   
 
 0.957
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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