stam protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

stam

Uncharacterized protein. (562 aa)

Predicted Functional Partners:

stam2

0.998

hgs

0.998

vps28

0.988

tsg101

0.988

vps37a

0.985

usp8

0.976

rps27a

0.970

Ubc

0.959

stambp

0.934

stambpl1

0.934

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ubc	hgs	ENSCMIP00000028897	ENSCMIP00000048714	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.964
Ubc	rps27a	ENSCMIP00000028897	ENSCMIP00000006356	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.992
Ubc	stam	ENSCMIP00000028897	ENSCMIP00000009733	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.959
Ubc	stam2	ENSCMIP00000028897	ENSCMIP00000040913	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.964
Ubc	stambp	ENSCMIP00000028897	ENSCMIP00000023689	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.759
Ubc	stambpl1	ENSCMIP00000028897	ENSCMIP00000046343	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.759
Ubc	tsg101	ENSCMIP00000028897	ENSCMIP00000026177	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.960
Ubc	usp8	ENSCMIP00000028897	ENSCMIP00000045601	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.974
Ubc	vps28	ENSCMIP00000028897	ENSCMIP00000003040	Ubiquitin-like domain-containing protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.714
Ubc	vps37a	ENSCMIP00000028897	ENSCMIP00000032117	Ubiquitin-like domain-containing protein.	VPS37 C-terminal domain-containing protein.	0.573
hgs	Ubc	ENSCMIP00000048714	ENSCMIP00000028897	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.964
hgs	rps27a	ENSCMIP00000048714	ENSCMIP00000006356	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.965
hgs	stam	ENSCMIP00000048714	ENSCMIP00000009733	Uncharacterized protein.	Uncharacterized protein.	0.998
hgs	stam2	ENSCMIP00000048714	ENSCMIP00000040913	Uncharacterized protein.	Uncharacterized protein.	0.999
hgs	tsg101	ENSCMIP00000048714	ENSCMIP00000026177	Uncharacterized protein.	Uncharacterized protein.	0.994
hgs	usp8	ENSCMIP00000048714	ENSCMIP00000045601	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.967
hgs	vps28	ENSCMIP00000048714	ENSCMIP00000003040	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.984
hgs	vps37a	ENSCMIP00000048714	ENSCMIP00000032117	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.956
rps27a	Ubc	ENSCMIP00000006356	ENSCMIP00000028897	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.992
rps27a	hgs	ENSCMIP00000006356	ENSCMIP00000048714	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.965