STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smarcd1SWIB domain-containing protein. (506 aa)    
Predicted Functional Partners:
LOC103183838
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2.
  
0.991
smarcb1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.968
smarce1
HMG box domain-containing protein.
   
 0.958
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.938
brd9
Bromo domain-containing protein.
   
 0.931
phf10
Uncharacterized protein.
    
 0.929
pbrm1
Uncharacterized protein.
   
 0.923
bcl7a
Uncharacterized protein.
   
 0.906
brd7
Bromo domain-containing protein.
   
 0.906
smarcd3
SWIB domain-containing protein.
  
  
 
0.901
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.