banf1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

banf1

Barrier-to-autointegration factor. (90 aa)

Predicted Functional Partners:

ankle2

0.872

lemd3

0.869

vrk2

0.782

vrk1

0.782

rbm39

0.779

LOC103174054

0.768

LOC103187531

0.768

lmnb2

0.768

lmnb1

0.768

LOC103191459

0.749

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103174054	banf1	ENSCMIP00000000353	ENSCMIP00000009778	IF rod domain-containing protein.	Barrier-to-autointegration factor.	0.768
LOC103174054	lemd3	ENSCMIP00000000353	ENSCMIP00000024036	IF rod domain-containing protein.	LEM domain-containing protein.	0.609
LOC103174054	rbm39	ENSCMIP00000000353	ENSCMIP00000006327	IF rod domain-containing protein.	Uncharacterized protein.	0.491
LOC103187531	banf1	ENSCMIP00000006876	ENSCMIP00000009778	Uncharacterized protein; Belongs to the intermediate filament family.	Barrier-to-autointegration factor.	0.768
LOC103187531	lemd3	ENSCMIP00000006876	ENSCMIP00000024036	Uncharacterized protein; Belongs to the intermediate filament family.	LEM domain-containing protein.	0.609
LOC103187531	lmnb1	ENSCMIP00000006876	ENSCMIP00000029013	Uncharacterized protein; Belongs to the intermediate filament family.	Uncharacterized protein; Belongs to the intermediate filament family.	0.902
LOC103187531	lmnb2	ENSCMIP00000006876	ENSCMIP00000020983	Uncharacterized protein; Belongs to the intermediate filament family.	Uncharacterized protein; Belongs to the intermediate filament family.	0.904
LOC103187531	rbm39	ENSCMIP00000006876	ENSCMIP00000006327	Uncharacterized protein; Belongs to the intermediate filament family.	Uncharacterized protein.	0.491
LOC103191459	ankle2	ENSCMIP00000008990	ENSCMIP00000031276	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	LEM domain-containing protein.	0.712
LOC103191459	banf1	ENSCMIP00000008990	ENSCMIP00000009778	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	Barrier-to-autointegration factor.	0.749
ankle2	LOC103191459	ENSCMIP00000031276	ENSCMIP00000008990	LEM domain-containing protein.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.712
ankle2	banf1	ENSCMIP00000031276	ENSCMIP00000009778	LEM domain-containing protein.	Barrier-to-autointegration factor.	0.872
ankle2	lemd3	ENSCMIP00000031276	ENSCMIP00000024036	LEM domain-containing protein.	LEM domain-containing protein.	0.414
ankle2	rbm39	ENSCMIP00000031276	ENSCMIP00000006327	LEM domain-containing protein.	Uncharacterized protein.	0.494
ankle2	vrk1	ENSCMIP00000031276	ENSCMIP00000033245	LEM domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.804
ankle2	vrk2	ENSCMIP00000031276	ENSCMIP00000005289	LEM domain-containing protein.	Protein kinase domain-containing protein.	0.804
banf1	LOC103174054	ENSCMIP00000009778	ENSCMIP00000000353	Barrier-to-autointegration factor.	IF rod domain-containing protein.	0.768
banf1	LOC103187531	ENSCMIP00000009778	ENSCMIP00000006876	Barrier-to-autointegration factor.	Uncharacterized protein; Belongs to the intermediate filament family.	0.768
banf1	LOC103191459	ENSCMIP00000009778	ENSCMIP00000008990	Barrier-to-autointegration factor.	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.749
banf1	ankle2	ENSCMIP00000009778	ENSCMIP00000031276	Barrier-to-autointegration factor.	LEM domain-containing protein.	0.872