fez1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fez1

Fasciculation and elongation protein zeta-1-like protein. (421 aa)

Predicted Functional Partners:

ENSCMIP00000008667

0.641

scoc

0.641

cnpy2

0.508

unc119

0.456

ulk3

0.442

atxn7l3

0.442

lsm10

0.438

ak3

0.426

ENSCMIP00000010333

0.426

ENSCMIP00000011053

0.426

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000008667	fez1	ENSCMIP00000008667	ENSCMIP00000009780	Uncharacterized protein.	Fasciculation and elongation protein zeta-1-like protein.	0.641
ENSCMIP00000010333	fez1	ENSCMIP00000010333	ENSCMIP00000009780	Uncharacterized protein.	Fasciculation and elongation protein zeta-1-like protein.	0.426
ENSCMIP00000011053	fez1	ENSCMIP00000011053	ENSCMIP00000009780	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor 2 family.	Fasciculation and elongation protein zeta-1-like protein.	0.426
ak3	fez1	ENSCMIP00000003975	ENSCMIP00000009780	GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities.	Fasciculation and elongation protein zeta-1-like protein.	0.426
atxn7l3	fez1	ENSCMIP00000020255	ENSCMIP00000009780	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Fasciculation and elongation protein zeta-1-like protein.	0.442
cnpy2	fez1	ENSCMIP00000022250	ENSCMIP00000009780	DUF3456 domain-containing protein.	Fasciculation and elongation protein zeta-1-like protein.	0.508
fez1	ENSCMIP00000008667	ENSCMIP00000009780	ENSCMIP00000008667	Fasciculation and elongation protein zeta-1-like protein.	Uncharacterized protein.	0.641
fez1	ENSCMIP00000010333	ENSCMIP00000009780	ENSCMIP00000010333	Fasciculation and elongation protein zeta-1-like protein.	Uncharacterized protein.	0.426
fez1	ENSCMIP00000011053	ENSCMIP00000009780	ENSCMIP00000011053	Fasciculation and elongation protein zeta-1-like protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor 2 family.	0.426
fez1	ak3	ENSCMIP00000009780	ENSCMIP00000003975	Fasciculation and elongation protein zeta-1-like protein.	GTP:AMP phosphotransferase AK3, mitochondrial; Involved in maintaining the homeostasis of cellular nucleotides by catalyzing the interconversion of nucleoside phosphates. Has GTP:AMP phosphotransferase and ITP:AMP phosphotransferase activities.	0.426
fez1	atxn7l3	ENSCMIP00000009780	ENSCMIP00000020255	Fasciculation and elongation protein zeta-1-like protein.	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	0.442
fez1	cnpy2	ENSCMIP00000009780	ENSCMIP00000022250	Fasciculation and elongation protein zeta-1-like protein.	DUF3456 domain-containing protein.	0.508
fez1	lsm10	ENSCMIP00000009780	ENSCMIP00000031248	Fasciculation and elongation protein zeta-1-like protein.	Sm domain-containing protein.	0.438
fez1	scoc	ENSCMIP00000009780	ENSCMIP00000048199	Fasciculation and elongation protein zeta-1-like protein.	Uncharacterized protein.	0.641
fez1	ulk3	ENSCMIP00000009780	ENSCMIP00000015752	Fasciculation and elongation protein zeta-1-like protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.442
fez1	unc119	ENSCMIP00000009780	ENSCMIP00000030832	Fasciculation and elongation protein zeta-1-like protein.	GMP_PDE_delta domain-containing protein.	0.456
lsm10	fez1	ENSCMIP00000031248	ENSCMIP00000009780	Sm domain-containing protein.	Fasciculation and elongation protein zeta-1-like protein.	0.438
scoc	fez1	ENSCMIP00000048199	ENSCMIP00000009780	Uncharacterized protein.	Fasciculation and elongation protein zeta-1-like protein.	0.641
ulk3	fez1	ENSCMIP00000015752	ENSCMIP00000009780	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Fasciculation and elongation protein zeta-1-like protein.	0.442
unc119	fez1	ENSCMIP00000030832	ENSCMIP00000009780	GMP_PDE_delta domain-containing protein.	Fasciculation and elongation protein zeta-1-like protein.	0.456