Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103191484NTR domain-containing protein. (218 aa)    
Predicted Functional Partners:
mmp15
ZnMc domain-containing protein.
   
 0.966
mmp9
Uncharacterized protein.
   
 0.870
timp3
NTR domain-containing protein.
   
 
 0.767
mmp16
ZnMc domain-containing protein.
   
 0.742
mmp17
Uncharacterized protein.
   
 0.742
mmp24
ZnMc domain-containing protein.
   
 0.742
mmp21
ZnMc domain-containing protein; Belongs to the peptidase M10A family.
   
 0.687
LOC103188550
ZnMc domain-containing protein; Belongs to the peptidase M10A family.
   
 0.687
LOC103177386
ZnMc domain-containing protein.
   
 0.687
tgfbr3
Transforming growth factor beta receptor type 3-like protein.
   
 
 0.672
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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