pick1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pick1

AH domain-containing protein. (373 aa)

Predicted Functional Partners:

gria2

0.996

tspan7

0.973

ENSCMIP00000005707

0.962

tpt1

0.962

grip1

0.942

ENSCMIP00000001530

0.863

ccdc62

0.851

grip2

0.850

gria1

0.823

gria3

0.823

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001530	pick1	ENSCMIP00000001530	ENSCMIP00000009868	Uncharacterized protein.	AH domain-containing protein.	0.863
ENSCMIP00000005707	pick1	ENSCMIP00000005707	ENSCMIP00000009868	Uncharacterized protein.	AH domain-containing protein.	0.962
ENSCMIP00000005707	tpt1	ENSCMIP00000005707	ENSCMIP00000027507	Uncharacterized protein.	Translationally-controlled tumor protein-like isoform 1; Belongs to the TCTP family.	0.962
ccdc62	pick1	ENSCMIP00000012617	ENSCMIP00000009868	Uncharacterized protein.	AH domain-containing protein.	0.851
gria1	gria2	ENSCMIP00000012306	ENSCMIP00000021700	Uncharacterized protein.	Uncharacterized protein.	0.952
gria1	grip1	ENSCMIP00000012306	ENSCMIP00000024185	Uncharacterized protein.	Uncharacterized protein.	0.825
gria1	grip2	ENSCMIP00000012306	ENSCMIP00000049304	Uncharacterized protein.	Uncharacterized protein.	0.549
gria1	pick1	ENSCMIP00000012306	ENSCMIP00000009868	Uncharacterized protein.	AH domain-containing protein.	0.823
gria1	tspan7	ENSCMIP00000012306	ENSCMIP00000024239	Uncharacterized protein.	Tetraspanin.	0.425
gria2	gria1	ENSCMIP00000021700	ENSCMIP00000012306	Uncharacterized protein.	Uncharacterized protein.	0.952
gria2	gria3	ENSCMIP00000021700	ENSCMIP00000038576	Uncharacterized protein.	Uncharacterized protein.	0.952
gria2	grip1	ENSCMIP00000021700	ENSCMIP00000024185	Uncharacterized protein.	Uncharacterized protein.	0.994
gria2	grip2	ENSCMIP00000021700	ENSCMIP00000049304	Uncharacterized protein.	Uncharacterized protein.	0.791
gria2	pick1	ENSCMIP00000021700	ENSCMIP00000009868	Uncharacterized protein.	AH domain-containing protein.	0.996
gria2	tspan7	ENSCMIP00000021700	ENSCMIP00000024239	Uncharacterized protein.	Tetraspanin.	0.605
gria3	gria2	ENSCMIP00000038576	ENSCMIP00000021700	Uncharacterized protein.	Uncharacterized protein.	0.952
gria3	grip1	ENSCMIP00000038576	ENSCMIP00000024185	Uncharacterized protein.	Uncharacterized protein.	0.825
gria3	grip2	ENSCMIP00000038576	ENSCMIP00000049304	Uncharacterized protein.	Uncharacterized protein.	0.549
gria3	pick1	ENSCMIP00000038576	ENSCMIP00000009868	Uncharacterized protein.	AH domain-containing protein.	0.823
gria3	tspan7	ENSCMIP00000038576	ENSCMIP00000024239	Uncharacterized protein.	Tetraspanin.	0.425