Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103173315Uncharacterized protein. (165 aa)    
Predicted Functional Partners:
znf598
RING-type domain-containing protein.
   
 
 0.964
ddx6
Putative ATP-dependent RNA helicase DDX6-like protein; Belongs to the DEAD box helicase family.
    
 
 0.954
gigyf2
GYF domain-containing protein.
 
 
   0.945
LOC103172182
GYF domain-containing protein.
 
 
   0.942
ENSCMIP00000003355
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.884
eif4e2
Eukaryotic translation initiation factor 4E type 2-like protein; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.884
dis3l
RNB domain-containing protein; Belongs to the RNR ribonuclease family.
   
 
 0.871
tnrc6a
TNRC6-PABC_bdg domain-containing protein.
   
 
 0.867
tnrc6c
Uncharacterized protein.
   
 
 0.867
eif3i
Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
    
 
 0.719
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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