STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
calhm3Uncharacterized protein. (332 aa)    
Predicted Functional Partners:
hand2
BHLH domain-containing protein.
   
  
 0.682
PANX
Pannexin; Structural component of the gap junctions and the hemichannels; Belongs to the pannexin family.
      
 0.678
vcl
Uncharacterized protein.
      
 0.671
hand1
BHLH domain-containing protein.
   
  
 0.660
tspo
Uncharacterized protein.
      
 0.638
klhl29
BTB domain-containing protein.
      
 0.601
myadml2
Uncharacterized protein.
      
 0.590
ano6
Anoctamin.
      
 0.585
ptpre
Uncharacterized protein.
      
 0.509
ENSCMIP00000008461
Thioredoxin domain-containing protein.
      
 0.484
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.