STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubash3bSH3 domain-containing protein. (582 aa)    
Predicted Functional Partners:
h6pd
Uncharacterized protein.
  
  
 0.613
gpi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.590
ENSCMIP00000034200
Gp_dh_N domain-containing protein.
    
 0.578
cstf3
Suf domain-containing protein.
     
 0.551
enoph1
Enolase-phosphatase E1; Bifunctional enzyme that catalyzes the enolization of 2,3- diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK- MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene).
     
 0.512
tkt
Transket_pyr domain-containing protein.
    
 0.489
shmt1
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.480
shmt2
Serine hydroxymethyltransferase, mitochondrial-like protein.
    
 0.480
LOC103188177
FBPase domain-containing protein; Belongs to the FBPase class 1 family.
   
 
 0.475
LOC103188178
Fructose-1,6-bisphosphatase 1; Belongs to the FBPase class 1 family.
   
 
 0.475
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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