STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103190185IRF tryptophan pentad repeat domain-containing protein. (489 aa)    
Predicted Functional Partners:
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.623
traf6
TNF receptor-associated factor.
   
 0.524
irf1
Interferon regulatory factor.
  
0.496
sting1
Uncharacterized protein.
   
 0.476
ripk4
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.443
crebbp
Uncharacterized protein.
    
 0.434
plk3
Serine/threonine-protein kinase PLK.
   
 0.423
plk1
Serine/threonine-protein kinase PLK.
   
 0.423
plk2
Serine/threonine-protein kinase PLK.
   
 0.423
Tnip1
CC2-LZ domain-containing protein.
  
   
 0.418
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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