Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103173339Uncharacterized protein. (344 aa)    
Predicted Functional Partners:
xpc
Uncharacterized protein.
   
 0.940
ngly1
PAW domain-containing protein.
    
 0.936
psmc1
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.912
uba52
Ribosomal protein L40-like isoform 1.
   
 0.904
xpa
DNA repair protein complementing XP-A cells-like protein.
    
 0.904
atxn3
Josephin domain-containing protein.
    
 0.884
vcp
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 0.868
trip12
Putative E3 ubiquitin-protein ligase TRIP12.
    
 0.867
LOC103174237
HELICc2 domain-containing protein.
    
 0.853
Ubc
Ubiquitin-like domain-containing protein.
    
 0.848
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.