Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
otud6bOTU domain-containing protein. (282 aa)    
Predicted Functional Partners:
otub2
OTU domain-containing protein.
    
 
 0.788
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.717
usp45
Ubiquitin carboxyl-terminal hydrolase.
      
 0.716
usp47
USP domain-containing protein; Belongs to the peptidase C19 family.
      
 0.700
Tmem74b
Uncharacterized protein.
      
 0.678
Rps8
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 
 0.664
usp8
Uncharacterized protein; Belongs to the peptidase C19 family.
      
 0.655
trip12
Putative E3 ubiquitin-protein ligase TRIP12.
      
 0.651
cops5
MPN domain-containing protein.
   
  
 0.648
usp22
Ubiquitin carboxyl-terminal hydrolase.
      
 0.646
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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