STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103182000Uncharacterized protein. (192 aa)    
Predicted Functional Partners:
tmub1
Transmembrane and ubiquitin-like domain-containing protein 1.
      
 0.793
tmem259
Uncharacterized protein.
      
 0.792
rnf170
RING-type domain-containing protein.
      
 0.763
phf10
Uncharacterized protein.
      
 0.718
tmub2
Transmembrane and ubiquitin-like domain-containing protein 2-like protein.
      
 0.676
ermard
DUF4209 domain-containing protein.
      
 0.675
LOC103172646
PHB domain-containing protein.
    
 
 0.674
erlin1
PHB domain-containing protein.
    
 
 0.674
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
      
 0.672
ENSCMIP00000006533
Uncharacterized protein.
      
 0.662
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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