wac protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

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[Homology]

Score

wac

WW domain-containing protein. (647 aa)

Predicted Functional Partners:

rbm25

0.973

ENSCMIP00000000775

0.970

snrnp70

0.883

cdc5l

0.881

u2af2

0.853

sf3b3

0.849

ENSCMIP00000003367

0.848

prpf39

0.813

htatsf1

0.805

ncbp1

0.775

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000000775	ncbp1	ENSCMIP00000000775	ENSCMIP00000016241	E3 ubiquitin protein ligase.	MIF4G domain-containing protein.	0.664
ENSCMIP00000000775	wac	ENSCMIP00000000775	ENSCMIP00000010317	E3 ubiquitin protein ligase.	WW domain-containing protein.	0.970
ENSCMIP00000003367	cdc5l	ENSCMIP00000003367	ENSCMIP00000023381	Uncharacterized protein.	Cell division cycle 5-like protein.	0.950
ENSCMIP00000003367	htatsf1	ENSCMIP00000003367	ENSCMIP00000006902	Uncharacterized protein.	Uncharacterized protein.	0.857
ENSCMIP00000003367	ncbp1	ENSCMIP00000003367	ENSCMIP00000016241	Uncharacterized protein.	MIF4G domain-containing protein.	0.945
ENSCMIP00000003367	prpf39	ENSCMIP00000003367	ENSCMIP00000006119	Uncharacterized protein.	Uncharacterized protein.	0.524
ENSCMIP00000003367	rbm25	ENSCMIP00000003367	ENSCMIP00000044527	Uncharacterized protein.	Uncharacterized protein.	0.702
ENSCMIP00000003367	sf3b3	ENSCMIP00000003367	ENSCMIP00000031331	Uncharacterized protein.	CPSF_A domain-containing protein.	0.999
ENSCMIP00000003367	snrnp70	ENSCMIP00000003367	ENSCMIP00000024538	Uncharacterized protein.	U1 small nuclear ribonucleoprotein 70 kDa.	0.917
ENSCMIP00000003367	u2af2	ENSCMIP00000003367	ENSCMIP00000006457	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.980
ENSCMIP00000003367	wac	ENSCMIP00000003367	ENSCMIP00000010317	Uncharacterized protein.	WW domain-containing protein.	0.848
cdc5l	ENSCMIP00000003367	ENSCMIP00000023381	ENSCMIP00000003367	Cell division cycle 5-like protein.	Uncharacterized protein.	0.950
cdc5l	ncbp1	ENSCMIP00000023381	ENSCMIP00000016241	Cell division cycle 5-like protein.	MIF4G domain-containing protein.	0.876
cdc5l	prpf39	ENSCMIP00000023381	ENSCMIP00000006119	Cell division cycle 5-like protein.	Uncharacterized protein.	0.877
cdc5l	sf3b3	ENSCMIP00000023381	ENSCMIP00000031331	Cell division cycle 5-like protein.	CPSF_A domain-containing protein.	0.954
cdc5l	snrnp70	ENSCMIP00000023381	ENSCMIP00000024538	Cell division cycle 5-like protein.	U1 small nuclear ribonucleoprotein 70 kDa.	0.449
cdc5l	u2af2	ENSCMIP00000023381	ENSCMIP00000006457	Cell division cycle 5-like protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.957
cdc5l	wac	ENSCMIP00000023381	ENSCMIP00000010317	Cell division cycle 5-like protein.	WW domain-containing protein.	0.881
htatsf1	ENSCMIP00000003367	ENSCMIP00000006902	ENSCMIP00000003367	Uncharacterized protein.	Uncharacterized protein.	0.857
htatsf1	rbm25	ENSCMIP00000006902	ENSCMIP00000044527	Uncharacterized protein.	Uncharacterized protein.	0.924