nmb protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nmb

Neuromedin B-like protein. (134 aa)

Predicted Functional Partners:

nmbr

0.971

grpr

0.965

grp

0.939

elp1

0.763

elp5

0.756

LOC103172745

0.716

elp3

0.716

sgce

0.671

LOC103190071

0.671

elp4

0.614

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103172745	elp1	ENSCMIP00000006781	ENSCMIP00000025765	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.959
LOC103172745	elp3	ENSCMIP00000006781	ENSCMIP00000030639	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.950
LOC103172745	elp4	ENSCMIP00000006781	ENSCMIP00000044253	Uncharacterized protein.	Uncharacterized protein.	0.944
LOC103172745	elp5	ENSCMIP00000006781	ENSCMIP00000002765	Uncharacterized protein.	Uncharacterized protein.	0.936
LOC103172745	nmb	ENSCMIP00000006781	ENSCMIP00000010349	Uncharacterized protein.	Neuromedin B-like protein.	0.716
LOC103190071	nmb	ENSCMIP00000042153	ENSCMIP00000010349	CADG domain-containing protein.	Neuromedin B-like protein.	0.671
elp1	LOC103172745	ENSCMIP00000025765	ENSCMIP00000006781	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.959
elp1	elp3	ENSCMIP00000025765	ENSCMIP00000030639	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	N-acetyltransferase domain-containing protein.	0.959
elp1	elp4	ENSCMIP00000025765	ENSCMIP00000044253	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.995
elp1	elp5	ENSCMIP00000025765	ENSCMIP00000002765	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.987
elp1	nmb	ENSCMIP00000025765	ENSCMIP00000010349	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Neuromedin B-like protein.	0.763
elp3	LOC103172745	ENSCMIP00000030639	ENSCMIP00000006781	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.950
elp3	elp1	ENSCMIP00000030639	ENSCMIP00000025765	N-acetyltransferase domain-containing protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.959
elp3	elp4	ENSCMIP00000030639	ENSCMIP00000044253	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.944
elp3	elp5	ENSCMIP00000030639	ENSCMIP00000002765	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.936
elp3	nmb	ENSCMIP00000030639	ENSCMIP00000010349	N-acetyltransferase domain-containing protein.	Neuromedin B-like protein.	0.716
elp4	LOC103172745	ENSCMIP00000044253	ENSCMIP00000006781	Uncharacterized protein.	Uncharacterized protein.	0.944
elp4	elp1	ENSCMIP00000044253	ENSCMIP00000025765	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.995
elp4	elp3	ENSCMIP00000044253	ENSCMIP00000030639	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.944
elp4	elp5	ENSCMIP00000044253	ENSCMIP00000002765	Uncharacterized protein.	Uncharacterized protein.	0.997