pfdn5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

pfdn5

Uncharacterized protein. (141 aa)

Predicted Functional Partners:

pfdn6

0.999

vbp1

0.999

pfdn1

0.999

pfdn4

0.998

ENSCMIP00000007386

0.993

ENSCMIP00000010265

0.993

rps13

0.973

Rps11

0.968

rpl29

0.945

rpl24

0.933

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000007386	pfdn1	ENSCMIP00000007386	ENSCMIP00000012996	Uncharacterized protein.	Uncharacterized protein.	0.992
ENSCMIP00000007386	pfdn4	ENSCMIP00000007386	ENSCMIP00000032477	Uncharacterized protein.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.989
ENSCMIP00000007386	pfdn5	ENSCMIP00000007386	ENSCMIP00000010369	Uncharacterized protein.	Uncharacterized protein.	0.993
ENSCMIP00000007386	pfdn6	ENSCMIP00000007386	ENSCMIP00000006866	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSCMIP00000007386	vbp1	ENSCMIP00000007386	ENSCMIP00000009664	Uncharacterized protein.	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.	0.991
ENSCMIP00000010265	pfdn1	ENSCMIP00000010265	ENSCMIP00000012996	Uncharacterized protein.	Uncharacterized protein.	0.992
ENSCMIP00000010265	pfdn4	ENSCMIP00000010265	ENSCMIP00000032477	Uncharacterized protein.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.989
ENSCMIP00000010265	pfdn5	ENSCMIP00000010265	ENSCMIP00000010369	Uncharacterized protein.	Uncharacterized protein.	0.993
ENSCMIP00000010265	pfdn6	ENSCMIP00000010265	ENSCMIP00000006866	Uncharacterized protein.	Uncharacterized protein.	0.996
ENSCMIP00000010265	vbp1	ENSCMIP00000010265	ENSCMIP00000009664	Uncharacterized protein.	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.	0.991
Rps11	pfdn5	ENSCMIP00000034490	ENSCMIP00000010369	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein.	0.968
Rps11	rpl24	ENSCMIP00000034490	ENSCMIP00000047843	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	60S ribosomal protein L24.	0.999
Rps11	rpl29	ENSCMIP00000034490	ENSCMIP00000020607	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.998
Rps11	rps13	ENSCMIP00000034490	ENSCMIP00000032695	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
pfdn1	ENSCMIP00000007386	ENSCMIP00000012996	ENSCMIP00000007386	Uncharacterized protein.	Uncharacterized protein.	0.992
pfdn1	ENSCMIP00000010265	ENSCMIP00000012996	ENSCMIP00000010265	Uncharacterized protein.	Uncharacterized protein.	0.992
pfdn1	pfdn4	ENSCMIP00000012996	ENSCMIP00000032477	Uncharacterized protein.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.998
pfdn1	pfdn5	ENSCMIP00000012996	ENSCMIP00000010369	Uncharacterized protein.	Uncharacterized protein.	0.999
pfdn1	pfdn6	ENSCMIP00000012996	ENSCMIP00000006866	Uncharacterized protein.	Uncharacterized protein.	0.999
pfdn1	vbp1	ENSCMIP00000012996	ENSCMIP00000009664	Uncharacterized protein.	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.	0.998