plxdc1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

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Coexpression

Experiments

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[Homology]

Score

plxdc1

PSI domain-containing protein. (491 aa)

Predicted Functional Partners:

tubgcp3

0.463

agtrap

0.459

mysm1

0.445

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
agtrap	plxdc1	ENSCMIP00000013083	ENSCMIP00000010441	Uncharacterized protein.	PSI domain-containing protein.	0.459
mysm1	plxdc1	ENSCMIP00000047519	ENSCMIP00000010441	Uncharacterized protein.	PSI domain-containing protein.	0.445
plxdc1	agtrap	ENSCMIP00000010441	ENSCMIP00000013083	PSI domain-containing protein.	Uncharacterized protein.	0.459
plxdc1	mysm1	ENSCMIP00000010441	ENSCMIP00000047519	PSI domain-containing protein.	Uncharacterized protein.	0.445
plxdc1	tubgcp3	ENSCMIP00000010441	ENSCMIP00000031378	PSI domain-containing protein.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.463
tubgcp3	plxdc1	ENSCMIP00000031378	ENSCMIP00000010441	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	PSI domain-containing protein.	0.463