ptbp2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

ptbp2

Uncharacterized protein. (518 aa)

Predicted Functional Partners:

hnrnpk

0.880

LOC103186664

0.848

hnrnpa2b1

0.804

srsf1

0.788

elavl1

0.767

hnrnpa1

0.724

hnrnpa3

0.724

hnrnpl

0.706

ENSCMIP00000005334

0.706

LOC103172653

0.706

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000005334	LOC103186664	ENSCMIP00000005334	ENSCMIP00000031850	Uncharacterized protein.	RRM domain-containing protein.	0.859
ENSCMIP00000005334	elavl1	ENSCMIP00000005334	ENSCMIP00000047351	Uncharacterized protein.	ELAV-like protein; Belongs to the RRM elav family.	0.440
ENSCMIP00000005334	hnrnpa1	ENSCMIP00000005334	ENSCMIP00000000190	Uncharacterized protein.	Uncharacterized protein.	0.626
ENSCMIP00000005334	hnrnpa2b1	ENSCMIP00000005334	ENSCMIP00000013702	Uncharacterized protein.	Heterogeneous nuclear ribonucleoproteins A2/B1-like protein.	0.626
ENSCMIP00000005334	hnrnpa3	ENSCMIP00000005334	ENSCMIP00000030012	Uncharacterized protein.	Uncharacterized protein.	0.626
ENSCMIP00000005334	hnrnpk	ENSCMIP00000005334	ENSCMIP00000032849	Uncharacterized protein.	Uncharacterized protein.	0.904
ENSCMIP00000005334	ptbp2	ENSCMIP00000005334	ENSCMIP00000010462	Uncharacterized protein.	Uncharacterized protein.	0.706
ENSCMIP00000005334	srsf1	ENSCMIP00000005334	ENSCMIP00000027547	Uncharacterized protein.	Serine/arginine-rich splicing factor 1B.	0.610
LOC103172653	LOC103186664	ENSCMIP00000005340	ENSCMIP00000031850	RRM domain-containing protein.	RRM domain-containing protein.	0.859
LOC103172653	elavl1	ENSCMIP00000005340	ENSCMIP00000047351	RRM domain-containing protein.	ELAV-like protein; Belongs to the RRM elav family.	0.440
LOC103172653	hnrnpa1	ENSCMIP00000005340	ENSCMIP00000000190	RRM domain-containing protein.	Uncharacterized protein.	0.626
LOC103172653	hnrnpa2b1	ENSCMIP00000005340	ENSCMIP00000013702	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoproteins A2/B1-like protein.	0.626
LOC103172653	hnrnpa3	ENSCMIP00000005340	ENSCMIP00000030012	RRM domain-containing protein.	Uncharacterized protein.	0.626
LOC103172653	hnrnpk	ENSCMIP00000005340	ENSCMIP00000032849	RRM domain-containing protein.	Uncharacterized protein.	0.904
LOC103172653	ptbp2	ENSCMIP00000005340	ENSCMIP00000010462	RRM domain-containing protein.	Uncharacterized protein.	0.706
LOC103172653	srsf1	ENSCMIP00000005340	ENSCMIP00000027547	RRM domain-containing protein.	Serine/arginine-rich splicing factor 1B.	0.610
LOC103186664	ENSCMIP00000005334	ENSCMIP00000031850	ENSCMIP00000005334	RRM domain-containing protein.	Uncharacterized protein.	0.859
LOC103186664	LOC103172653	ENSCMIP00000031850	ENSCMIP00000005340	RRM domain-containing protein.	RRM domain-containing protein.	0.859
LOC103186664	elavl1	ENSCMIP00000031850	ENSCMIP00000047351	RRM domain-containing protein.	ELAV-like protein; Belongs to the RRM elav family.	0.925
LOC103186664	hnrnpa1	ENSCMIP00000031850	ENSCMIP00000000190	RRM domain-containing protein.	Uncharacterized protein.	0.860