Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zfand6AN1-type zinc finger protein 6-like protein. (243 aa)    
Predicted Functional Partners:
LOC103184611
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
   0.753
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
   0.753
Ubc
Ubiquitin-like domain-containing protein.
    
  0.741
aplf
Uncharacterized protein.
      
 0.692
rabep1
Uncharacterized protein.
    
 0.682
uba52
Ribosomal protein L40-like isoform 1.
    
 0.655
abhd13
AB hydrolase-1 domain-containing protein.
      
 0.616
ercc4
ERCC4 domain-containing protein.
      
 0.616
sbspon
RPE-spondin-like protein.
      
 0.609
tanc1
Uncharacterized protein.
     
 0.594
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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