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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000010512UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (171 aa)    
Predicted Functional Partners:
trip12
Putative E3 ubiquitin-protein ligase TRIP12.
   
 0.951
Ubc
Ubiquitin-like domain-containing protein.
   
 0.840
uba52
Ribosomal protein L40-like isoform 1.
   
 0.817
rps27a
Ubiquitin-like domain-containing protein.
   
 0.793
rbx1
RING-type domain-containing protein.
   
 0.788
otub2
OTU domain-containing protein.
    
 0.784
zfand4
Uncharacterized protein.
   
 0.777
cul1
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.765
stub1
E3 ubiquitin-protein ligase CHIP.
   
 0.762
ube2k
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.757
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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