STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103174637Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (279 aa)    
Predicted Functional Partners:
LOC103175416
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
   
 
 0.972
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.923
hmox2
Heme oxygenase 2-like protein.
     
 0.901
LOC103186568
Uncharacterized protein.
 
  
 
 0.847
LOC103189055
Cytochrome c domain-containing protein.
   
 
 0.758
mrpl35
Uncharacterized protein.
   
  
 0.670
rexo4
Exonuclease domain-containing protein.
      
 0.612
ndufv2
NADH dehydrogenase (Ubiquinone) flavoprotein 2, mitochondrial.
   
  
 0.595
arhgap6
Rho-GAP domain-containing protein.
      
 0.590
npat
LisH domain-containing protein.
    
 
 0.585
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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