Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000010692LRRCT domain-containing protein. (366 aa)    
Predicted Functional Partners:
lrr1
Uncharacterized protein.
  
   
 0.709
LOC103189822
Pannexin_like domain-containing protein.
  
     0.523
lrrc2
Uncharacterized protein.
  
    0.522
Lrrc10
Uncharacterized protein.
  
    0.522
ENSCMIP00000033143
Pannexin_like domain-containing protein.
  
     0.520
lrrc8d
Leucine-rich repeat-containing protein 8A.
  
     0.519
LOC103184633
Pannexin_like domain-containing protein.
  
     0.518
lrrc39
Uncharacterized protein.
  
    0.517
lrrc10b
Uncharacterized protein.
  
    0.516
Epyc
Uncharacterized protein.
   
  
0.515
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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