STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000010693HEPN domain-containing protein. (4178 aa)    
Predicted Functional Partners:
apaf1
Uncharacterized protein.
   
 0.678
svil
HP domain-containing protein.
      
 0.669
LOC103187741
Gelsolin-like domain-containing protein.
      
 0.669
ENSCMIP00000018586
Uncharacterized protein.
      
 0.669
incenp
Inner centromere protein.
   
 0.616
atp5f1b
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.592
cdca8
Nbl1_Borealin_N domain-containing protein.
   
 0.592
ENSCMIP00000001300
Uncharacterized protein.
   
 0.581
LOC103190377
Aurora kinase B; Belongs to the protein kinase superfamily.
   
 0.581
aurka
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.581
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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