snx27 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

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Experiments

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[Homology]

Score

snx27

Uncharacterized protein. (335 aa)

Predicted Functional Partners:

vps26a

0.959

LOC103183941

0.941

vps26b

0.812

vps35

0.749

vps29

0.681

tbc1d5

0.613

cytip

0.610

eea1

0.597

snx1

0.578

snx2

0.578

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103183941	snx27	ENSCMIP00000027831	ENSCMIP00000010773	Uncharacterized protein.	Uncharacterized protein.	0.941
cytip	snx27	ENSCMIP00000019935	ENSCMIP00000010773	PDZ domain-containing protein.	Uncharacterized protein.	0.610
eea1	snx1	ENSCMIP00000027892	ENSCMIP00000023551	FYVE-type domain-containing protein.	PX domain-containing protein.	0.420
eea1	snx2	ENSCMIP00000027892	ENSCMIP00000027911	FYVE-type domain-containing protein.	PX domain-containing protein.	0.420
eea1	snx27	ENSCMIP00000027892	ENSCMIP00000010773	FYVE-type domain-containing protein.	Uncharacterized protein.	0.597
eea1	vps29	ENSCMIP00000027892	ENSCMIP00000014288	FYVE-type domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.465
eea1	vps35	ENSCMIP00000027892	ENSCMIP00000037671	FYVE-type domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.568
snx1	eea1	ENSCMIP00000023551	ENSCMIP00000027892	PX domain-containing protein.	FYVE-type domain-containing protein.	0.420
snx1	snx27	ENSCMIP00000023551	ENSCMIP00000010773	PX domain-containing protein.	Uncharacterized protein.	0.578
snx1	vps26a	ENSCMIP00000023551	ENSCMIP00000045375	PX domain-containing protein.	Vacuolar protein sorting-associated protein 26A-like protein.	0.805
snx1	vps26b	ENSCMIP00000023551	ENSCMIP00000012978	PX domain-containing protein.	Uncharacterized protein.	0.790
snx1	vps29	ENSCMIP00000023551	ENSCMIP00000014288	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.953
snx1	vps35	ENSCMIP00000023551	ENSCMIP00000037671	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.955
snx2	eea1	ENSCMIP00000027911	ENSCMIP00000027892	PX domain-containing protein.	FYVE-type domain-containing protein.	0.420
snx2	snx27	ENSCMIP00000027911	ENSCMIP00000010773	PX domain-containing protein.	Uncharacterized protein.	0.578
snx2	vps26a	ENSCMIP00000027911	ENSCMIP00000045375	PX domain-containing protein.	Vacuolar protein sorting-associated protein 26A-like protein.	0.805
snx2	vps26b	ENSCMIP00000027911	ENSCMIP00000012978	PX domain-containing protein.	Uncharacterized protein.	0.790
snx2	vps29	ENSCMIP00000027911	ENSCMIP00000014288	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.953
snx2	vps35	ENSCMIP00000027911	ENSCMIP00000037671	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.955
snx27	LOC103183941	ENSCMIP00000010773	ENSCMIP00000027831	Uncharacterized protein.	Uncharacterized protein.	0.941