cript protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

cript

Uncharacterized protein. (109 aa)

Predicted Functional Partners:

armc7

0.903

Phf5a

0.806

ENSCMIP00000003367

0.800

rnf113a

0.800

sf3b1

0.800

sf3b3

0.800

prpf8

0.800

dlg1

0.677

dlg3

0.677

dlg2

0.677

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003367	Phf5a	ENSCMIP00000003367	ENSCMIP00000010413	Uncharacterized protein.	Uncharacterized protein.	0.987
ENSCMIP00000003367	armc7	ENSCMIP00000003367	ENSCMIP00000026312	Uncharacterized protein.	Armadillo repeat-containing protein 7.	0.900
ENSCMIP00000003367	cript	ENSCMIP00000003367	ENSCMIP00000010802	Uncharacterized protein.	Uncharacterized protein.	0.800
ENSCMIP00000003367	prpf8	ENSCMIP00000003367	ENSCMIP00000043521	Uncharacterized protein.	MPN domain-containing protein.	0.974
ENSCMIP00000003367	rnf113a	ENSCMIP00000003367	ENSCMIP00000009784	Uncharacterized protein.	Uncharacterized protein.	0.958
ENSCMIP00000003367	sf3b1	ENSCMIP00000003367	ENSCMIP00000029539	Uncharacterized protein.	TOG domain-containing protein.	0.999
ENSCMIP00000003367	sf3b3	ENSCMIP00000003367	ENSCMIP00000031331	Uncharacterized protein.	CPSF_A domain-containing protein.	0.999
Phf5a	ENSCMIP00000003367	ENSCMIP00000010413	ENSCMIP00000003367	Uncharacterized protein.	Uncharacterized protein.	0.987
Phf5a	armc7	ENSCMIP00000010413	ENSCMIP00000026312	Uncharacterized protein.	Armadillo repeat-containing protein 7.	0.900
Phf5a	cript	ENSCMIP00000010413	ENSCMIP00000010802	Uncharacterized protein.	Uncharacterized protein.	0.806
Phf5a	prpf8	ENSCMIP00000010413	ENSCMIP00000043521	Uncharacterized protein.	MPN domain-containing protein.	0.854
Phf5a	rnf113a	ENSCMIP00000010413	ENSCMIP00000009784	Uncharacterized protein.	Uncharacterized protein.	0.820
Phf5a	sf3b1	ENSCMIP00000010413	ENSCMIP00000029539	Uncharacterized protein.	TOG domain-containing protein.	0.999
Phf5a	sf3b3	ENSCMIP00000010413	ENSCMIP00000031331	Uncharacterized protein.	CPSF_A domain-containing protein.	0.999
armc7	ENSCMIP00000003367	ENSCMIP00000026312	ENSCMIP00000003367	Armadillo repeat-containing protein 7.	Uncharacterized protein.	0.900
armc7	Phf5a	ENSCMIP00000026312	ENSCMIP00000010413	Armadillo repeat-containing protein 7.	Uncharacterized protein.	0.900
armc7	cript	ENSCMIP00000026312	ENSCMIP00000010802	Armadillo repeat-containing protein 7.	Uncharacterized protein.	0.903
armc7	prpf8	ENSCMIP00000026312	ENSCMIP00000043521	Armadillo repeat-containing protein 7.	MPN domain-containing protein.	0.900
armc7	rnf113a	ENSCMIP00000026312	ENSCMIP00000009784	Armadillo repeat-containing protein 7.	Uncharacterized protein.	0.900
armc7	sf3b1	ENSCMIP00000026312	ENSCMIP00000029539	Armadillo repeat-containing protein 7.	TOG domain-containing protein.	0.900