raph1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

raph1

Uncharacterized protein. (1090 aa)

Predicted Functional Partners:

abi1

0.837

rap1b

0.753

rap1a

0.753

evl

0.709

enah

0.709

pfn4

0.685

grb2

0.662

nck1

0.661

nck2

0.661

tlnrd1

0.654

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
abi1	enah	ENSCMIP00000002889	ENSCMIP00000041566	Uncharacterized protein.	VASP_tetra domain-containing protein.	0.637
abi1	evl	ENSCMIP00000002889	ENSCMIP00000036268	Uncharacterized protein.	WH1 domain-containing protein.	0.637
abi1	grb2	ENSCMIP00000002889	ENSCMIP00000043216	Uncharacterized protein.	Uncharacterized protein.	0.664
abi1	nck1	ENSCMIP00000002889	ENSCMIP00000038494	Uncharacterized protein.	Cytoplasmic protein.	0.903
abi1	nck2	ENSCMIP00000002889	ENSCMIP00000041157	Uncharacterized protein.	Cytoplasmic protein.	0.903
abi1	raph1	ENSCMIP00000002889	ENSCMIP00000010834	Uncharacterized protein.	Uncharacterized protein.	0.837
enah	abi1	ENSCMIP00000041566	ENSCMIP00000002889	VASP_tetra domain-containing protein.	Uncharacterized protein.	0.637
enah	pfn4	ENSCMIP00000041566	ENSCMIP00000023613	VASP_tetra domain-containing protein.	Profilin; Belongs to the profilin family.	0.766
enah	raph1	ENSCMIP00000041566	ENSCMIP00000010834	VASP_tetra domain-containing protein.	Uncharacterized protein.	0.709
evl	abi1	ENSCMIP00000036268	ENSCMIP00000002889	WH1 domain-containing protein.	Uncharacterized protein.	0.637
evl	pfn4	ENSCMIP00000036268	ENSCMIP00000023613	WH1 domain-containing protein.	Profilin; Belongs to the profilin family.	0.766
evl	raph1	ENSCMIP00000036268	ENSCMIP00000010834	WH1 domain-containing protein.	Uncharacterized protein.	0.709
grb2	abi1	ENSCMIP00000043216	ENSCMIP00000002889	Uncharacterized protein.	Uncharacterized protein.	0.664
grb2	nck1	ENSCMIP00000043216	ENSCMIP00000038494	Uncharacterized protein.	Cytoplasmic protein.	0.643
grb2	nck2	ENSCMIP00000043216	ENSCMIP00000041157	Uncharacterized protein.	Cytoplasmic protein.	0.643
grb2	rap1a	ENSCMIP00000043216	ENSCMIP00000033867	Uncharacterized protein.	Uncharacterized protein.	0.668
grb2	rap1b	ENSCMIP00000043216	ENSCMIP00000024533	Uncharacterized protein.	Uncharacterized protein.	0.668
grb2	raph1	ENSCMIP00000043216	ENSCMIP00000010834	Uncharacterized protein.	Uncharacterized protein.	0.662
grb2	tlnrd1	ENSCMIP00000043216	ENSCMIP00000007341	Uncharacterized protein.	Uncharacterized protein.	0.509
nck1	abi1	ENSCMIP00000038494	ENSCMIP00000002889	Cytoplasmic protein.	Uncharacterized protein.	0.903