Nrxn1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Nrxn1

Uncharacterized protein. (265 aa)

Predicted Functional Partners:

nlgn1

0.943

ENSCMIP00000006192

0.943

Nlgn3

0.943

LOC103191489

0.900

ENSCMIP00000011173

0.900

ENSCMIP00000025983

0.900

ENSCMIP00000039437

0.899

ENSCMIP00000039442

0.899

lrrtm2

0.826

Lrrtm3

0.748

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000006192	ENSCMIP00000011173	ENSCMIP00000006192	ENSCMIP00000011173	COesterase domain-containing protein.	Uncharacterized protein.	0.461
ENSCMIP00000006192	ENSCMIP00000025983	ENSCMIP00000006192	ENSCMIP00000025983	COesterase domain-containing protein.	4.1m domain-containing protein.	0.461
ENSCMIP00000006192	ENSCMIP00000039437	ENSCMIP00000006192	ENSCMIP00000039437	COesterase domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.461
ENSCMIP00000006192	ENSCMIP00000039442	ENSCMIP00000006192	ENSCMIP00000039442	COesterase domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.461
ENSCMIP00000006192	LOC103191489	ENSCMIP00000006192	ENSCMIP00000010023	COesterase domain-containing protein.	Uncharacterized protein.	0.461
ENSCMIP00000006192	Nlgn3	ENSCMIP00000006192	ENSCMIP00000025044	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000006192	Nrxn1	ENSCMIP00000006192	ENSCMIP00000010850	COesterase domain-containing protein.	Uncharacterized protein.	0.943
ENSCMIP00000006192	nlgn1	ENSCMIP00000006192	ENSCMIP00000003085	COesterase domain-containing protein.	COesterase domain-containing protein.	0.900
ENSCMIP00000011173	ENSCMIP00000006192	ENSCMIP00000011173	ENSCMIP00000006192	Uncharacterized protein.	COesterase domain-containing protein.	0.461
ENSCMIP00000011173	ENSCMIP00000025983	ENSCMIP00000011173	ENSCMIP00000025983	Uncharacterized protein.	4.1m domain-containing protein.	0.900
ENSCMIP00000011173	Nlgn3	ENSCMIP00000011173	ENSCMIP00000025044	Uncharacterized protein.	COesterase domain-containing protein.	0.461
ENSCMIP00000011173	Nrxn1	ENSCMIP00000011173	ENSCMIP00000010850	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000011173	lrrtm2	ENSCMIP00000011173	ENSCMIP00000015884	Uncharacterized protein.	Uncharacterized protein.	0.522
ENSCMIP00000011173	nlgn1	ENSCMIP00000011173	ENSCMIP00000003085	Uncharacterized protein.	COesterase domain-containing protein.	0.461
ENSCMIP00000025983	ENSCMIP00000006192	ENSCMIP00000025983	ENSCMIP00000006192	4.1m domain-containing protein.	COesterase domain-containing protein.	0.461
ENSCMIP00000025983	ENSCMIP00000011173	ENSCMIP00000025983	ENSCMIP00000011173	4.1m domain-containing protein.	Uncharacterized protein.	0.900
ENSCMIP00000025983	ENSCMIP00000039437	ENSCMIP00000025983	ENSCMIP00000039437	4.1m domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.900
ENSCMIP00000025983	ENSCMIP00000039442	ENSCMIP00000025983	ENSCMIP00000039442	4.1m domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.900
ENSCMIP00000025983	LOC103191489	ENSCMIP00000025983	ENSCMIP00000010023	4.1m domain-containing protein.	Uncharacterized protein.	0.900
ENSCMIP00000025983	Nlgn3	ENSCMIP00000025983	ENSCMIP00000025044	4.1m domain-containing protein.	COesterase domain-containing protein.	0.461