Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sh2d3aUncharacterized protein. (710 aa)    
Predicted Functional Partners:
tulp4
Uncharacterized protein; Belongs to the TUB family.
     
 0.620
kcne4
Potassium voltage-gated channel subfamily E member 4-like protein.
     
 0.601
nedd9
SH3 domain-containing protein.
    
 0.572
bcar1
SH3 domain-containing protein.
    
 0.572
ENSCMIP00000034491
SH3 domain-containing protein.
    
 0.540
fibcd1
Fibrinogen C-terminal domain-containing protein.
    
 
 0.455
LOC103176693
Uncharacterized protein.
    
 0.441
dnajc2
Uncharacterized protein.
   
 0.407
fnbp1l
Uncharacterized protein.
    
 
 0.404
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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