Ifi35 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ifi35

Uncharacterized protein. (351 aa)

Predicted Functional Partners:

fau

0.997

nmi

0.989

rpl26l1

0.986

rpl35

0.985

rpl35a

0.985

rpl14

0.985

rpl6

0.985

rpl31

0.985

rpl23a

0.985

ENSCMIP00000045669

0.985

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000045669	Ifi35	ENSCMIP00000045669	ENSCMIP00000010892	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein.	0.985
ENSCMIP00000045669	fau	ENSCMIP00000045669	ENSCMIP00000005942	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ubiquitin-like domain-containing protein.	0.999
ENSCMIP00000045669	rpl14	ENSCMIP00000045669	ENSCMIP00000037370	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal_L14e domain-containing protein.	0.999
ENSCMIP00000045669	rpl23a	ENSCMIP00000045669	ENSCMIP00000043687	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L23a-like protein; Belongs to the universal ribosomal protein uL23 family.	0.999
ENSCMIP00000045669	rpl26l1	ENSCMIP00000045669	ENSCMIP00000028143	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Ribosomal protein L26 isoform 1.	0.999
ENSCMIP00000045669	rpl31	ENSCMIP00000045669	ENSCMIP00000042376	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein.	0.999
ENSCMIP00000045669	rpl35	ENSCMIP00000045669	ENSCMIP00000008741	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein.	0.999
ENSCMIP00000045669	rpl35a	ENSCMIP00000045669	ENSCMIP00000020637	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	Uncharacterized protein.	0.999
ENSCMIP00000045669	rpl6	ENSCMIP00000045669	ENSCMIP00000038770	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
Ifi35	ENSCMIP00000045669	ENSCMIP00000010892	ENSCMIP00000045669	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.985
Ifi35	fau	ENSCMIP00000010892	ENSCMIP00000005942	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
Ifi35	nmi	ENSCMIP00000010892	ENSCMIP00000022932	Uncharacterized protein.	Uncharacterized protein.	0.989
Ifi35	rpl14	ENSCMIP00000010892	ENSCMIP00000037370	Uncharacterized protein.	Ribosomal_L14e domain-containing protein.	0.985
Ifi35	rpl23a	ENSCMIP00000010892	ENSCMIP00000043687	Uncharacterized protein.	60S ribosomal protein L23a-like protein; Belongs to the universal ribosomal protein uL23 family.	0.985
Ifi35	rpl26l1	ENSCMIP00000010892	ENSCMIP00000028143	Uncharacterized protein.	Ribosomal protein L26 isoform 1.	0.986
Ifi35	rpl31	ENSCMIP00000010892	ENSCMIP00000042376	Uncharacterized protein.	Uncharacterized protein.	0.985
Ifi35	rpl35	ENSCMIP00000010892	ENSCMIP00000008741	Uncharacterized protein.	Uncharacterized protein.	0.985
Ifi35	rpl35a	ENSCMIP00000010892	ENSCMIP00000020637	Uncharacterized protein.	Uncharacterized protein.	0.985
Ifi35	rpl6	ENSCMIP00000010892	ENSCMIP00000038770	Uncharacterized protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.985
fau	ENSCMIP00000045669	ENSCMIP00000005942	ENSCMIP00000045669	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999