zic1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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[Homology]

Score

zic1

Uncharacterized protein. (492 aa)

Predicted Functional Partners:

LOC103183084

0.541

prdm11

0.502

sox2

0.496

Rag1

0.486

svep1

0.444

gpr27

0.435

mysm1

0.425

ENSCMIP00000005060

0.420

LOC103187939

0.420

Pax3

0.414

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000005060	LOC103187939	ENSCMIP00000005060	ENSCMIP00000030608	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein; Belongs to the NDK family.	0.755
ENSCMIP00000005060	svep1	ENSCMIP00000005060	ENSCMIP00000021825	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein.	0.571
ENSCMIP00000005060	zic1	ENSCMIP00000005060	ENSCMIP00000010901	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein.	0.420
LOC103183084	sox2	ENSCMIP00000006949	ENSCMIP00000032932	POU domain protein.	Transcription factor SOX-2.	0.894
LOC103183084	zic1	ENSCMIP00000006949	ENSCMIP00000010901	POU domain protein.	Uncharacterized protein.	0.541
LOC103187939	ENSCMIP00000005060	ENSCMIP00000030608	ENSCMIP00000005060	Uncharacterized protein; Belongs to the NDK family.	NDK domain-containing protein; Belongs to the NDK family.	0.755
LOC103187939	svep1	ENSCMIP00000030608	ENSCMIP00000021825	Uncharacterized protein; Belongs to the NDK family.	Uncharacterized protein.	0.571
LOC103187939	zic1	ENSCMIP00000030608	ENSCMIP00000010901	Uncharacterized protein; Belongs to the NDK family.	Uncharacterized protein.	0.420
Pax3	sox2	ENSCMIP00000042755	ENSCMIP00000032932	Uncharacterized protein.	Transcription factor SOX-2.	0.441
Pax3	zic1	ENSCMIP00000042755	ENSCMIP00000010901	Uncharacterized protein.	Uncharacterized protein.	0.414
Rag1	svep1	ENSCMIP00000037989	ENSCMIP00000021825	V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...]	Uncharacterized protein.	0.516
Rag1	zic1	ENSCMIP00000037989	ENSCMIP00000010901	V(D)J recombination-activating protein 1; Catalytic component of the RAG complex, a multiprotein complex that mediates the DNA cleavage phase during V(D)J recombination. V(D)J recombination assembles a diverse repertoire of immunoglobulin and T-cell receptor genes in developing B and T- lymphocytes through rearrangement of different V (variable), in some cases D (diversity), and J (joining) gene segments. In the RAG complex, RAG1 mediates the DNA-binding to the conserved recombination signal sequences (RSS) and catalyzes the DNA cleavage activities by introducing a double-strand break [...]	Uncharacterized protein.	0.486
gpr27	zic1	ENSCMIP00000015027	ENSCMIP00000010901	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.435
mysm1	zic1	ENSCMIP00000047519	ENSCMIP00000010901	Uncharacterized protein.	Uncharacterized protein.	0.425
prdm11	zic1	ENSCMIP00000018547	ENSCMIP00000010901	SET domain-containing protein.	Uncharacterized protein.	0.502
sox2	LOC103183084	ENSCMIP00000032932	ENSCMIP00000006949	Transcription factor SOX-2.	POU domain protein.	0.894
sox2	Pax3	ENSCMIP00000032932	ENSCMIP00000042755	Transcription factor SOX-2.	Uncharacterized protein.	0.441
sox2	zic1	ENSCMIP00000032932	ENSCMIP00000010901	Transcription factor SOX-2.	Uncharacterized protein.	0.496
svep1	ENSCMIP00000005060	ENSCMIP00000021825	ENSCMIP00000005060	Uncharacterized protein.	NDK domain-containing protein; Belongs to the NDK family.	0.571
svep1	LOC103187939	ENSCMIP00000021825	ENSCMIP00000030608	Uncharacterized protein.	Uncharacterized protein; Belongs to the NDK family.	0.571