STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sin3aHDAC_interact domain-containing protein. (1277 aa)    
Predicted Functional Partners:
hdac2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.973
hdac1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.973
ski
Uncharacterized protein.
   
 0.972
arid4a
ARID domain-containing protein.
   
 0.945
arid4b
ARID domain-containing protein.
   
 0.945
phf12
Uncharacterized protein.
   
 0.945
mecp2
MBD domain-containing protein.
    
 0.943
sap130
SAP130_C domain-containing protein.
   
 0.934
suds3
Sin3 histone deacetylase corepressor complex component SDS3-like protein.
   
 0.926
smad4
Mothers against decapentaplegic homolog.
    
 0.910
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.