STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab24Ras-related protein Rab-24. (243 aa)    
Predicted Functional Partners:
LOC103184088
VPS9 domain-containing protein.
   
 0.970
rabgef1
Rab5 GDP/GTP exchange factor-like protein.
   
 0.970
appl1
PID domain-containing protein.
    
 
 0.887
appl2
Uncharacterized protein.
    
 
 0.887
rbsn
FYVE-type domain-containing protein.
   
 0.801
ENSCMIP00000004945
Uncharacterized protein.
    
 0.788
gak
Uncharacterized protein.
   
 0.773
rab9a
Ras-related protein Rab-9A-like protein.
  
0.674
Vps45
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.672
LOC103173852
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.660
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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