Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
e4f1Uncharacterized protein. (729 aa)    
Predicted Functional Partners:
rpa2
Replication protein A2, 32kDa.
    
 0.806
mms19
Uncharacterized protein.
      
 0.692
asl
Argininosuccinate lyase.
      
 0.677
rpl3
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.656
rpl26l1
Ribosomal protein L26 isoform 1.
    
   0.651
arid4a
ARID domain-containing protein.
    
 0.613
mrps22
Uncharacterized protein.
    
  0.600
mrps23
MRP-S23 domain-containing protein.
    
  0.594
LOC103173381
Uncharacterized protein.
      
 0.587
mrps31
Uncharacterized protein.
    
  0.556
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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