armc4 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

armc4

Uncharacterized protein. (999 aa)

Predicted Functional Partners:

ENSCMIP00000037830

0.981

efcab1

0.950

ENSCMIP00000032677

0.920

dnai2

0.918

drc1

0.911

Ccdc40

0.911

cfap52

0.908

LOC103184705

0.902

rsph6a

0.896

dnai1

0.894

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccdc40	ENSCMIP00000032677	ENSCMIP00000046032	ENSCMIP00000032677	Uncharacterized protein.	Uncharacterized protein.	0.979
Ccdc40	ENSCMIP00000037830	ENSCMIP00000046032	ENSCMIP00000037830	Uncharacterized protein.	Uncharacterized protein.	0.798
Ccdc40	LOC103184705	ENSCMIP00000046032	ENSCMIP00000001663	Uncharacterized protein.	Uncharacterized protein.	0.814
Ccdc40	armc4	ENSCMIP00000046032	ENSCMIP00000011178	Uncharacterized protein.	Uncharacterized protein.	0.911
Ccdc40	cfap52	ENSCMIP00000046032	ENSCMIP00000043094	Uncharacterized protein.	WD repeat domain 16.	0.858
Ccdc40	dnai1	ENSCMIP00000046032	ENSCMIP00000023725	Uncharacterized protein.	Dynein intermediate chain 1, axonemal.	0.915
Ccdc40	dnai2	ENSCMIP00000046032	ENSCMIP00000045728	Uncharacterized protein.	Uncharacterized protein.	0.921
Ccdc40	drc1	ENSCMIP00000046032	ENSCMIP00000009413	Uncharacterized protein.	Uncharacterized protein.	0.916
Ccdc40	efcab1	ENSCMIP00000046032	ENSCMIP00000039885	Uncharacterized protein.	Uncharacterized protein.	0.907
Ccdc40	rsph6a	ENSCMIP00000046032	ENSCMIP00000045012	Uncharacterized protein.	Uncharacterized protein.	0.945
ENSCMIP00000032677	Ccdc40	ENSCMIP00000032677	ENSCMIP00000046032	Uncharacterized protein.	Uncharacterized protein.	0.979
ENSCMIP00000032677	ENSCMIP00000037830	ENSCMIP00000032677	ENSCMIP00000037830	Uncharacterized protein.	Uncharacterized protein.	0.816
ENSCMIP00000032677	LOC103184705	ENSCMIP00000032677	ENSCMIP00000001663	Uncharacterized protein.	Uncharacterized protein.	0.748
ENSCMIP00000032677	armc4	ENSCMIP00000032677	ENSCMIP00000011178	Uncharacterized protein.	Uncharacterized protein.	0.920
ENSCMIP00000032677	cfap52	ENSCMIP00000032677	ENSCMIP00000043094	Uncharacterized protein.	WD repeat domain 16.	0.831
ENSCMIP00000032677	dnai1	ENSCMIP00000032677	ENSCMIP00000023725	Uncharacterized protein.	Dynein intermediate chain 1, axonemal.	0.920
ENSCMIP00000032677	dnai2	ENSCMIP00000032677	ENSCMIP00000045728	Uncharacterized protein.	Uncharacterized protein.	0.939
ENSCMIP00000032677	drc1	ENSCMIP00000032677	ENSCMIP00000009413	Uncharacterized protein.	Uncharacterized protein.	0.932
ENSCMIP00000032677	efcab1	ENSCMIP00000032677	ENSCMIP00000039885	Uncharacterized protein.	Uncharacterized protein.	0.837
ENSCMIP00000032677	rsph6a	ENSCMIP00000032677	ENSCMIP00000045012	Uncharacterized protein.	Uncharacterized protein.	0.924