ccdc151 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ccdc151

Uncharacterized protein. (209 aa)

Predicted Functional Partners:

ift46

0.893

armc4

0.865

ENSCMIP00000037830

0.843

Ccdc40

0.841

dnai1

0.803

ENSCMIP00000032677

0.800

commd8

0.796

dnai2

0.792

ift74

0.782

commd2

0.771

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccdc40	ENSCMIP00000032677	ENSCMIP00000046032	ENSCMIP00000032677	Uncharacterized protein.	Uncharacterized protein.	0.979
Ccdc40	ENSCMIP00000037830	ENSCMIP00000046032	ENSCMIP00000037830	Uncharacterized protein.	Uncharacterized protein.	0.798
Ccdc40	armc4	ENSCMIP00000046032	ENSCMIP00000011178	Uncharacterized protein.	Uncharacterized protein.	0.911
Ccdc40	ccdc151	ENSCMIP00000046032	ENSCMIP00000011315	Uncharacterized protein.	Uncharacterized protein.	0.841
Ccdc40	dnai1	ENSCMIP00000046032	ENSCMIP00000023725	Uncharacterized protein.	Dynein intermediate chain 1, axonemal.	0.915
Ccdc40	dnai2	ENSCMIP00000046032	ENSCMIP00000045728	Uncharacterized protein.	Uncharacterized protein.	0.921
ENSCMIP00000032677	Ccdc40	ENSCMIP00000032677	ENSCMIP00000046032	Uncharacterized protein.	Uncharacterized protein.	0.979
ENSCMIP00000032677	ENSCMIP00000037830	ENSCMIP00000032677	ENSCMIP00000037830	Uncharacterized protein.	Uncharacterized protein.	0.816
ENSCMIP00000032677	armc4	ENSCMIP00000032677	ENSCMIP00000011178	Uncharacterized protein.	Uncharacterized protein.	0.920
ENSCMIP00000032677	ccdc151	ENSCMIP00000032677	ENSCMIP00000011315	Uncharacterized protein.	Uncharacterized protein.	0.800
ENSCMIP00000032677	dnai1	ENSCMIP00000032677	ENSCMIP00000023725	Uncharacterized protein.	Dynein intermediate chain 1, axonemal.	0.920
ENSCMIP00000032677	dnai2	ENSCMIP00000032677	ENSCMIP00000045728	Uncharacterized protein.	Uncharacterized protein.	0.939
ENSCMIP00000037830	Ccdc40	ENSCMIP00000037830	ENSCMIP00000046032	Uncharacterized protein.	Uncharacterized protein.	0.798
ENSCMIP00000037830	ENSCMIP00000032677	ENSCMIP00000037830	ENSCMIP00000032677	Uncharacterized protein.	Uncharacterized protein.	0.816
ENSCMIP00000037830	armc4	ENSCMIP00000037830	ENSCMIP00000011178	Uncharacterized protein.	Uncharacterized protein.	0.981
ENSCMIP00000037830	ccdc151	ENSCMIP00000037830	ENSCMIP00000011315	Uncharacterized protein.	Uncharacterized protein.	0.843
ENSCMIP00000037830	dnai1	ENSCMIP00000037830	ENSCMIP00000023725	Uncharacterized protein.	Dynein intermediate chain 1, axonemal.	0.883
ENSCMIP00000037830	dnai2	ENSCMIP00000037830	ENSCMIP00000045728	Uncharacterized protein.	Uncharacterized protein.	0.870
armc4	Ccdc40	ENSCMIP00000011178	ENSCMIP00000046032	Uncharacterized protein.	Uncharacterized protein.	0.911
armc4	ENSCMIP00000032677	ENSCMIP00000011178	ENSCMIP00000032677	Uncharacterized protein.	Uncharacterized protein.	0.920