gemin6 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gemin6

Uncharacterized protein. (170 aa)

Predicted Functional Partners:

gemin2

0.540

LOC103173685

0.540

snrpg

0.540

LOC103188255

0.540

gemin8

0.540

gemin4

0.540

strap

0.540

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103173685	LOC103188255	ENSCMIP00000003824	ENSCMIP00000014954	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.807
LOC103173685	gemin2	ENSCMIP00000003824	ENSCMIP00000003062	Uncharacterized protein.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.982
LOC103173685	gemin4	ENSCMIP00000003824	ENSCMIP00000027508	Uncharacterized protein.	Uncharacterized protein.	0.985
LOC103173685	gemin6	ENSCMIP00000003824	ENSCMIP00000011335	Uncharacterized protein.	Uncharacterized protein.	0.540
LOC103173685	gemin8	ENSCMIP00000003824	ENSCMIP00000021974	Uncharacterized protein.	Uncharacterized protein.	0.985
LOC103173685	snrpg	ENSCMIP00000003824	ENSCMIP00000013211	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.892
LOC103173685	strap	ENSCMIP00000003824	ENSCMIP00000027626	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.940
LOC103188255	LOC103173685	ENSCMIP00000014954	ENSCMIP00000003824	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.807
LOC103188255	gemin2	ENSCMIP00000014954	ENSCMIP00000003062	WD_REPEATS_REGION domain-containing protein.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.982
LOC103188255	gemin4	ENSCMIP00000014954	ENSCMIP00000027508	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.985
LOC103188255	gemin6	ENSCMIP00000014954	ENSCMIP00000011335	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.540
LOC103188255	gemin8	ENSCMIP00000014954	ENSCMIP00000021974	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.985
LOC103188255	snrpg	ENSCMIP00000014954	ENSCMIP00000013211	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein G.	0.892
LOC103188255	strap	ENSCMIP00000014954	ENSCMIP00000027626	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.940
gemin2	LOC103173685	ENSCMIP00000003062	ENSCMIP00000003824	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Uncharacterized protein.	0.982
gemin2	LOC103188255	ENSCMIP00000003062	ENSCMIP00000014954	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	WD_REPEATS_REGION domain-containing protein.	0.982
gemin2	gemin4	ENSCMIP00000003062	ENSCMIP00000027508	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Uncharacterized protein.	0.998
gemin2	gemin6	ENSCMIP00000003062	ENSCMIP00000011335	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Uncharacterized protein.	0.540
gemin2	gemin8	ENSCMIP00000003062	ENSCMIP00000021974	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Uncharacterized protein.	0.999
gemin2	snrpg	ENSCMIP00000003062	ENSCMIP00000013211	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Small nuclear ribonucleoprotein G.	0.975